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Publications
Scientists are using sbi technology to generate high quality data for their research. Here you can find all relevant publications covering our products.
Scientists are using our CGQ, CGQ BioR and LIS technology to generate high quality data for publications. Here you can find all available publications covering our products:
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MPS
Strehl, L., Kuhn, A., Hoffmann, K., Mann, M., Magnus, J.B., 2025
A novel multiparameter sensor for shake flask cultivations: Online biomass, dissolved oxygen, and fluorescence monitoring for comprehensive bioprocess characterization
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CGQ
Berwanger, L.C., Thumm, N., Pascal Stirba, F., Gholamipoorfard, R., Pawlowski, A., Kolkhof, P., Volke, J., Kollmann, M., Wiegard, A., Axmann, I., 2025
Self-sustained rhythmic behavior of Synechocystis sp. PCC 6803 under continuous light conditions in the absence of light–dark entrainment
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Xu, X., Cocco, E., Guerriero, G., Sergeant, K., Jourdan, S., Renaut, J., Hausman, J.-F., Legay, S., 2025.
Harnessing apple cell suspension cultures in bioreactors for triterpene production: Transcriptomic insights into biomass and triterpene biosynthesis
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Becker, L., Dietz, E., Holtmann, D., 2025.
Robustness of the Cupriavidus necator-catalyzed production of α-humulene
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Antara, N.H., Stephan, D., 2025.
Chitin-amended media: Improving efficacy of Cordyceps fumosorosea as a control agent of Cydia pomonella
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Grybchuk-Ieremenko, A., Lipovská, K., Kouřilová, X., Obruča, S., Dvořák, P., 2025.
An initial genome editing toolset for Caldimonas thermodepolymerans, the first model of thermophilic polyhydroxyalkanoates producer
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Bonzanini, V., Momeni, M.H., Olofsson, K., Olsson, L., Geijer, C., 2025.
Impact of glucose and propionic acid on even and odd chain fatty acid profiles of oleaginous yeasts
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Starke, S., Velleman, L., Dobbert, B., Seibert, L., Witte, J., Jung S., Meyer, V., 2025.
The antifungal peptide AnAFP from Aspergillus niger promotes nutrient mobilization through autophagic recycling during asexual development
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Höfken, L.-M., Gatermann, S.G., Pfennigwerth, N., 2025.
Analysis of potential mechanisms of non-carbapenemase mediated carbapenem resistance in Acinetobacter baumannii
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Abou-Kandil, A., Tröger-Görler, S., Pschibul, A., Krüger, T., Rosin, M., Schmidt, F., et al., 2025.
The proteomic response of Aspergillus fumigatus to amphotericinB (AmB) reveals the involvement of the RTA-like protein RtaA in AmB resistance
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Rönitz, J., Herrmann, F., Wynands, B., Polen, T., Wierckx, N., 2024.
SIGHT—a system for solvent-tight incubation and growth monitoring in high throughput
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Peri K.V.R., Yuan L., Faria Oliveira F., Persson K., Alalam H.D., Olsson L., Larsbrink J., Kerkhoven E.J., Geijer C., 2024.
A unique metabolic gene cluster regulates lactose and galactose metabolism in the yeast Candida intermedia
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Lee, S.A., Henard, J.M., Alba, R.A.C., Benedict, C.A., Mayes, T.A., Henard, C.A., 2024.
Overexpression of native carbonic anhydrases increases carbon conversion efficiency in the methanotrophic biocatalyst Methylococcus capsulatus bath
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Patro, M., Sivabalasarma, S., Gfrerer, S., Rodriguez-Franco, M., Nußbaum, P., Ithurbide, S., Albers, S., 2024.
MinD2 modulates cell shape and motility in the archaeon Haloferax volcanii
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Varriale, L., Hengsbach, J.-N., Guo, T., Kuka, K., Tippkötter, N., Ulber, R., 2024.
Sustainable production of lactic acid using Lolium perenne as feedstock—a comparative study of fermentation at bench- and reactor-scale, and ensiling
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Grubb, B., Smelser, L., Goodson, D., Short, K., Roberton, M., 2024.
Bridging the gap: Identification of critical knowledge, skills, and abilities (KSAs) to fill entry-level bioprocess technician positions using the BILT Model
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Nerke, P., Korb, J., Haala, F., Hubmann, G., Lütz, S., 2024.
Metabolic bottlenecks of Pseudomonas taiwanensis VLB120 during growth on d-xylose via the Weimberg pathway
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Dreyer, A., Masanta, W.O., Lugert, R., Bohne, W., Groß, U., Leha, A., Dakna, M., Lenz, C., Zautner, A.E., 2024.
Proteome profiling of Campylobacter jejuni 81–176 at 37°C and 42°C by label-free mass spectrometry
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Cámara, E., Mormino, M., Sievers, V., Nygård, Y., 2024.
Saccharomyces cerevisiae strains performing similarly during fermentation of lignocellulosic hydrolysates show pronounced differences in transcriptional stress responses
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Graça, A.P., Nikitushkin, V., Ellerhorst, M., Vilhena, C., Klassert, T.E., Starick, A., Siemers, M., Al-Jammal, W.K., Vilotijevic, I., Slevogt, H., Papenfort, K., Lackner, G., 2024.
MftG is crucial for alcohol metabolism of mycobacteria by linking mycofactocin oxidation to respiration
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Dvořák, P., Burýšková, B., Popelářová, B., Ebert, B.E., Botka, T., Bujdo, D., Sánchez-Pascuala, A., Schöttler, H., Hayen, H., de Lorenzo, V., Blank, L.M., Benešík, M., 2024.
Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose
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Schoettner, K., Gunkel, C., Hogl, C., Stammler, G., Siepe, I., 2024.
Just one at a time: Fungal population experiments with Zymoseptoria tritici and metyltetraprole (Pavecto®) demonstrate the incompatibility of different cytochrome B mutations
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Richter, M., Sattler, C., Schöne, C., Rother, M., 2024.
Pyruvate-dependent growth of Methanosarcina acetivorans
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Schütte, L., Hanisch, P.G., Scheler, N., Haböck, K., Huber, R., Ersoy, F., Berger, R.G., 2024.
Squalene production under oxygen limitation by Schizochytrium sp. S31 in diferent cultivation systems
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Schloßhauer, J.L., Dondapati, S.K., Kubick, S., Zemella, A., 2024.
A cost-effective Pichia pastoris cell-free system driven by glycolytic intermediates enables the production of complex eukaryotic proteins
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Ulčar, B., Regueira, A., Podojsteršek, M., Boon, N., Ganigué, R., 2024.
Why do lactic acid bacteria thrive in chain elongation microbiomes?
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Peri, K.V.R, Yuan, L, Oliveira, F.F., Persson, K., Alalam, H.D., Olsson, L., Larsbrink, J., Kerkhoven, E.J., Geijer, C., 2023.
Regulation of lactose and galactose growth: Insights from a unique metabolic gene cluster in Candida intermedia
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Pianale, L.T., Caputo, F., Olsson, L., 2023.
Four ways of implementing robustness quantification in strain characterisation
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Sydow, A., Becker, L., Lombard, E., Ulber, R., Guillouet, S.E., Holtman, D., 2023.
Autotrophic production of the sesquiterpene α-humulene with Cupriavidus necator in a controlled bioreactor
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Berwanger, L.C., Thumm, N., Gholamipoor, R., Wiegard, A., Schlebusch, J., Kollmann, M., Axmann, I.M., 2023.
Self-sustained rhythmic behavior of Synechocystis PCC 6803 under continuous light conditions in the absence of light-dark entrainment
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Köppen, K., Rydzewski, K., Doellinger, J., Myrtennäs, K., Forsman, M., Appelt, S., Scholz, H., Heuner, K., 2023.
Phenotypic and genotypic discrimination of Francisella tularensis ssp. holarctica clades
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Wefelmeier, K., Schmitz, S., Maria Haut, A., Otten, J., Jülich, T., Blank, L.M., 2023.
Engineering the methylotrophic yeast Ogataea polymorpha for lactate production from methanol
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Amann, V., Kissmann, A-K., Mildenberger, V., Krebs, I., Perez-Erviti, J.A., Martell-Huguet, E.M., Otero-Gonzalez, A.J., Morales-Vicente, F., Rodríguez-Castaño, G.P., Firacative, C., Rodríguez, A., Ständker, L., Weil, T., Spellerberg, B., Stenger, S., Rosenau, F., 2023.
Cm-p5 peptide dimers inhibit biofilms of Candida albicans clinical isolates, C. parapsilosis and fluconazole-resistant mutants of C. auris
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Lewis, A.M., Willard, D.J., Manesh, M.J.H., Sivabalasarma, S., Albers, S.-V., Kelly, R.M., 2023.
Stay or go: Sulfolobales biofilm dispersal is dependent on a bifunctional VapB antitoxin
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Halmschlag, B., Völker, F., Hanke, R., Putri, S.P., Fukusaki, E., Büchs, J., Blank, L.M., 2023.
Metabolic engineering of B. subtilis 168 for increased precursor supply and poly-γ-glutamic acid production
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Sun, Y., Kokko, M., Vassilev, I., 2023.
Anode-assisted electro-fermentation with Bacillus subtilis under oxygen-limited conditions
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Friedrich, I., Kuritsyn, A., Hertel, R., Daniel, R., 2023.
Luteibacter flocculans sp. nov., isolated from a eutrophic pond and isolation and characterization of Luteibacter Phage vB_LflM-Pluto
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Langsdorf, A., Drommershausen, A.-L., Volkmar, M., Ulber, R., Holtmann, D., 2022.
Fermentative α-humulene production from homogenized grass clippings as a growth medium
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Krebs, S.K., Stech, M., Jorde, F., Rakotoarinoro, N., Ramm, F., Marinoff, S., Bahrke, S., Danielczyk, A., Wüstenhagen, D.A., Kubick, S., 2022.
Synthesis of an anti-CD7 recombinant immunotoxin based on PE24 in CHO and E. coli cell-free systems
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Ellerhorst, M., Barth, S.A., Graça, A.P., Al-Jammal, W.K., Peña-Ortiz, L., Vilotijevic, I., Lackner, G., 2022.
S‑adenosylmethionine (SAM)-dependent methyltransferase MftM is responsible for methylation of the redox cofactor mycofactocin
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Bauer, I., Abt, B., Yap, A., Leuchtle, B., Haas, H., 2022.
Online biomass monitoring enables characterization of the growth pattern of Aspergillus fumigatus in liquid shake conditions
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Brangsch, H., Höller, M., Krauße, T., Waqas, M., Schroeckh, V., Brakhage, A. A., Bunk, B., Spröer, C., Overmann, J., Kothe, E., 2022.
Extremophile metal resistance: Plasmid-encoded functions in Streptomyces mirabilis
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Sass, A., Vandenbussche, I., Bellich, B., Cescutti, P., Coenye, T., 2022.
Pellicle biofilm formation in Burkholderia cenocepacia J2315 is epigenetically regulated through WspH, a hybrid two-component system kinase-response regulator
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Cremanns, M., Lange, F., Gatermann, S.G., Pfennigwerth, N., 2022.
Effect of sigma E on carbapenem resistance in OXA-48-producing Klebsiella pneumoniae
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Friedrich, I., Bodenberger, B., Neubauer, H., Hertel, R., Daniel, R., 2021.
Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog’s lettuce (Groenlandia densa)
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Benevenuti, C., Branco, M., do Nascimento-Correa, M., Botelho, A., Ferreira, T., Amaral, P., 2021.
Residual gas for ethanol production by Clostridium carboxidivorans in a dual impeller stirred tank bioreactor (STBR)
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Pereira, F., Lopes, H., Maia, P., Meyer, B., Nocon, J., Jouhten, P., Konstantinidis, D., Kafkia, E., Rocha, M., Kötter, P., Rocha, I., Patil, K.R., 2021.
Model-guided development of an evolutionarily stable yeast chassis
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Nußbaum, P., Gerstner, M., Dingethal, M., Erb, C., Albers, S.-V., 2021.
The archaeal protein SepF is essential for cell division in Haloferax volcanii
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Wernig, F., Baumann, L., Boles, E., Oreb, M., 2021.
Production of octanoic acid in Saccharomyces cerevisiae: Investigation of new precursor supply engineering strategies and intrinsic limitations
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Tamayo Rojas, S.A., Schmidl, S., Boles, E., Oreb, M., 2021.
Glucose-induced internalization of the S. cerevisiae galactose permease Gal2 is dependent on phosphorylation and ubiquitination of its aminoterminal cytoplasmic tail
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Baumann, L., Bruder, S., Kabisch, J., Boles, E., Oreb, M., 2021.
High-throughput screening of an octanoic acid producer strain library enables detection of new targets for increasing titers in Saccharomyces cerevisiae
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Friedrich, I., Klassen, A., Neubauer, H., Schneider, D., Hertel, R., Daniel, R., 2021.
Living in a puddle of mud: Isolation and characterization of two novel Caulobacteraceae strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.
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Köppen, K., Prensa, G.I., Rydzewski, K., Tlapák, H., Holland, G., Heuner, K., 2021.
First description of a temperate bacteriophage (vB_FhiM_KIRK) of Francisella hispaniensis strain 3523
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Schmidl, S., Tamayo Rojas, S.A., Iancu, C.V., Choe, J.-y., Oreb, M., 2021.
Functional expression of the human glucose transporters GLUT2 and GLUT3 in yeast offers novel screening systems for GLUT-targeting drugs
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Baumann, L., Doughty, T., Siewers, V., Nielsen, J., Boles, E., Oreb, M., 2021.
Transcriptomic response of Saccharomyces cerevisiae to octanoic acid production
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Lapierre, F.M., Schmid, J., Ederer, B., Ihling, N., Büchs, J., Huber, R., 2020.
Revealing nutritional requirements of MICP-relevant Sporosarcina pasteurii DSM33 for growth improvement in chemically defined and complex media
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Sörensen, M., Khakimov, B., Nurjadi, D., Boutin, S., Yi, B., Dalpke, A.H., Eigenbrod, T., 2020.
Comparative evaluation of the effect of different growth media on in vitro sensitivity to azithromycin in multi-drug resistant Pseudomonas aeruginosa isolated from cystic fibrosis patient
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Halmschlag, B., Blank, L.M., 2020.
Poly-γ-glutamic acid production by Bacillus subtilis 168 using glucose as the sole carbon source: A metabolomic analysis
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Baes, R., Lemmens, L., Mignon, K., Carlier, M., Peeters, E., 2020.
Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius
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Riel, M., Eiden, F., Blank, L.M., Freyer, N., Hartmann, I., 2020.
Optimal bioreactor inoculum preparation in shake flasks with automated seed inoculation, conditioning and online monitoring
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Ravikrishnan, A., Blank, L.M., Srivastava, S., Raman, K., 2020.
Investigating metabolic interactions in a microbial co-culture through integrated modelling and experiments
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Halmschlag, B., Hoffmann, K., Hanke, R., Putri, S.P., Fukusaki, E., Büchs, J., Blank, L.M., 2020.
Comparison of isomerase and Weimberg pathway for γ-PGA production from xylose by engineered Bacillus subtilis
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Sass, A.M., De Waele, S., Daled, S., Devreese, B., Deforce, D., Van Nieuwerburgh, F., Coenye, T., 2019.
Small RNA NcS27 co-regulates utilization of carbon sources in Burkholderia cenocepacia J2315
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Halmschlag, B., Steurer, X., Putri, S.P., Fukusaki, E., Blank, L.M., 2019.
Tailor-made poly-γ-glutamic acid production
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Wynands, B., Otto, M., Runge, N., Preckel, S., Polen, T., Blank, L.M., Wierckx, N., 2019.
Streamlined Pseudomonas taiwanensis VLB120 chassis strains with improved bioprocess features
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Hosseinpour Tehrani, H., Tharmasothirajan, A., Track, E., Blank, L.M., Wierckx, N., 2019.
Engineering the morphology and metabolism of pH tolerant Ustilago cynodontis for efficient itaconic acid production
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Sass, A., Everaert, A., Van Acker, H., Van den Driessche, F., Coenye, T., 2018.
Targeting the nonmevalonate pathway in Burkholderia cenocepacia increases susceptibility to certain β-lactam antibiotics
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Wagner, M., Shen, L., Albersmeier, A., van der Kolk, N., Kim, S., Cha, J., Bräsen, C., Kalinowski, J., Siebers, B., Albers, S.-V., 2017.
Sulfolobus acidocaldarius transports pentoses via a carbohydrate uptake transporter 2 (CUT2)-type ABC transporter and metabolizes them through the aldolase-independent Weimberg pathway
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Sass, A., Kiekens, S., Coenye, T., 2017.
Identification of small RNAs abundant in Burkholderia cenocepacia biofilms reveal putative regulators with a potential role in carbon and iron metabolism
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Tripp, J., Essl, C., Iancu, C.V., Boles, E., Choe, J., Oreb, M., 2017.
Establishing a yeast-based screening system for discovery of human GLUT5 inhibitors and activators
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Gottardi, M., Knudsen, J.D., Prado, L., Oreb, M., Branduardi, P., Boles, E., 2017.
De novo biosynthesis of trans-cinnamic acid derivatives in Saccharomyces cerevisiae
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Bracharz, F., Redai, V., Bach, K., Qoura, F., Brück, T., 2017.
The effects of TORC signal interference on lipogenesis in the oleaginous yeast Trichosporon oleaginosus
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Bruder, S., Reifenrath, M., Thomik, T., Boles, E., Herzog, K., 2016.
Parallelised online biomass monitoring in shake flasks enables efficient strain and carbon source dependent growth characterisation of Saccharomyces cerevisiae
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CGQ BIOR
Soerjawinata, W., Prajapati, S., Barth, I., Lu, X., Ulber, R., Efferth, T., Kampeis, P., 2025.
Production of protease inhibitor with Penicillium sp. — Optimization of the medium for growth in pellet form and cytotoxicity testing
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Drenker, C., El Mazouar, D., Seib, T., Weißhaupt, S., Stephan, D., Kunz, S., Reineke, A., Rondot, Y., Linkies, A., Koch, E., 2024.
Biocontrol of plant pathogens by Lysobacter enzymogenes isolate LEC: efficacy of shake flask broth, fermentation broth and dried preparations
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Halmschlag, B., Völker, F., Hanke, R., Putri, S.P., Fukusaki, E., Büchs, J., Blank, L.M., 2023.
Metabolic engineering of B. subtilis 168 for increased precursor supply and poly-γ-glutamic acid production
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Soerjawinata, W., Kockler, I., Wommer, L., Frank, R., Schüffler, A., Schirmeister, T., Ulber, R., Kampeis, P., 2022.
Novel bioreactor internals for the cultivation of spore-forming fungi in pellet form
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Lira-Parada, P. A., Tuveri, A., Seibold, G. M., Bar, N., 2021.
Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum
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Pontius, K., Semenova, D., Silina, Y.E., Gernaey, K.C., Junicke, H., 2020.
Automated electrochemical glucose biosensor platform as an efficient tool toward on-line fermentation monitoring: Novel application approaches and insights
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Najjarzadeh, N., Krige A., Pamidi, T.R.K., Johansson, O., Enman, J., Matsakas, L., Rova, U., Christakopoulos, P., 2020.
Numerical modeling and verification of a sonobioreactor and its application on two model microorganisms
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Halmschlag, B., Hoffmann, K., Hanke, R., Putri, S.P., Fukusaki, E., Büchs, J., Blank, L.M., 2020.
Comparison of isomerase and Weimberg pathway for γ-PGA production from xylose by engineered Bacillus subtilis
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Halmschlag, B., Steurer, X., Putri, S.P., Fukusaki, E., Blank, L.M., 2019.
Tailor-made poly-γ-glutamic acid production
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LIS
Wefelmeier, K., Schmitz, S., Kösters, B.J., Liebal, U.W., Blank, L.M., 2024.
Methanol bioconversion into C3, C4, and C5 platform chemicals by the yeast Ogataea polymorpha
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Cui, N., Pozzobon, V., 2022.
Food-grade cultivation of Saccharomyces cerevisiae from potato waste
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Riel, M., Eiden, F., Blank, L.M., Freyer, N., Hartmann, I., 2020.
Optimal bioreactor inoculum preparation in shake flasks with automated seed inoculation, conditioning, and online monitoring
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Flow Cells
Kaiphanliam, K., Fraser-Hevlin, B., Barrow, E.S., Davis, W.C., Van Wie, B.J., 2023.